Veranstaltung
| Titel | Modeling of biological systems |
| Title | Modeling of biological systems |
| Schwerpunkt/Focus | |
| Sprache/Language | englisch |
| VV-Nr./Course No. | 136213 |
| Modulverantwortlich/Responsible | Dr. P. Czuppon |
| Vertreter/Co-responsible | |
| Anbieter/Teachers | Dr. P. Czuppon |
| Typ/Type | Lectures, Tutorials, Coding sessions |
| SWS/Semerster periods per week | |
| Arbeitslast(h)/Work load | 150 h |
| KP/Credit points | 5 KP |
| Zuordnung/Classification | Fortgeschrittenen-Modul |
| Semester/Semester | SoSe |
| Studierende/Students | MSc Biowissenschaften MSc Biotechnologie MSc Molekulare Biomedizin |
| Corona-Informationen/Corona-Information | |
| Zeit/Date | Block II: 27.05.2024 – 21.06.2024 |
| Ort/Location | tba |
| Beginn/Start | 27.05.2024 |
| Vorbesprechung/Obligatory pre-meeting | keine / none |
| Voraussetzung/Prerequisite | keine / none |
| Anmeldung/Registration | Online-Anmeldung |
| Leistungskontrollen/Performance assessments | homeworks, active participation in tutorials |
| Termine f. Leistungskontrollen/Date for performance assessments | |
| max. NP/Max. grade points | |
| Ziele/Aims | Design of a theoretical model that describes a biological phenomenon; theoretical analysis of a mathematical model; implementation and simulation of a model in julia |
| Inhalte/Content | The module is an introduction into modeling of biological systems in ecology, evolution and molecular biology; in particular no prior (mathematical or computational) knowledge is assumed. The goal is to teach the entire process of modeling, i.e., model design, model simulation and model analysis. The choice of a suitable model strongly depends on the biological question that one wants to study. In the module the advantages and disadvantages of different modeling approaches will be taught. Additionally, the students will learn some basic tools to analyze these different types of models. In the accompanying tutorials a special focus will be put on the implementation and simulation of the models (julia, which is python-like, but faster). |
| Methoden/Methods | model design starting from a biological question; stability analysis of ordinary differential equations (steady states, oscillations, long term behavior); analysis of structured populations (e.g. space- or age-structured); evolutionary invasion analyses; programming in julia |
| Berufsrelevante und interdisziplinäre Komponenten/Occupational and interdisciplinary skills | |
| Voraussetzung für/Prerequisite for | |
| Präsenzpflicht/Compulsory presence | ja |
| Plätze/Number of participants | 12 |
| Gruppengröße/Group size | |
| Materialien/Materials | |
| Literatur/Literature | Die Literatur wird in der ersten Vorlesung bekannt gegeben. -- Relevant literature will be announced in the first lecture. |
| Links | https://czuppon.net/teaching/ |
| Sonstiges/Further information |
Modulelemente:
Elemente of the module:
| Titel/Title | Zeit (von...bis)/Time (from...to) | Ort(Raum)/Location | |
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| Übungen/Practical exercises | |||
| Vorlesung/Lecture | |||
| Seminare/Semeinars | |||
| Exkursionen/Excursions |
= Modul gehört zum SPP Imoplant / Module is part of the SSP Imoplant
= Modul gehört zum SPP Evolution /Module is part of the SSP Evolution
= Modul gehört zum SPP Bioanalytics and Biochemistry /Module is part of the SSP Bioanalytics and Biochemistry
= Modul gehört zum SPP Neuroscience and Behaviour /Module is part of the SSP Neuroscience and Behaviour
= Modul gehört zum SPP Quantitative Cell Biology /Module is part of the SSP Quantitative Cell Biology